PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018400m
Common NameCARUB_v10018400mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 585aa    MW: 67400.3 Da    PI: 9.0951
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018400mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.62.1e-1839121390
             FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++Y+ + GF+vrk++  k+  +++++   +vC keg+r+e k +   ++  ++ tr+gC+a+++  ++k+g++++ ++e +HnH+l+
  Carubv10018400m  39 YKKYGGDHGFNVRKQQRLKK--KDKVVILLYVCPKEGYRKEPKVE---TSYLQPITRCGCNAHMTCYLQKNGRYKIVSFEVNHNHDLV 121
                      9*************997776..55588899***********9877...8999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1538121IPR004330FAR1 DNA binding domain
PfamPF105514.1E-8244303IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDPVCKSPVI MISKYENEKK YELAIYMDFS SNKTACTTYK KYGGDHGFNV RKQQRLKKKD  60
KVVILLYVCP KEGYRKEPKV ETSYLQPITR CGCNAHMTCY LQKNGRYKIV SFEVNHNHDL  120
VRTPMKHLMK VNQKIYVSQK QHANDADMSG ISANATVEMM RREVGGRENL GFMEKDYRND  180
IYQKRMAKME KGDAGTANHN HELVRTPMKH LFFYSMQLDE DDMITNIFWV DDRSISNYNL  240
FGDVVCFDST YKTNDYDRPF APFVGVNYHK QTVFFVETFL GTVSGKQPKT ILTDQPAAMA  300
KAIVKKHNLT ENKWLKNVFE VRAKWAVVYG RHTFTADIVS TQRSESMNDI LKRYLKSSYE  360
LLSFFEHNEL TANFKMMHTS SVLSATVEML QHAKEVYTPE IFKLFQNKSE MVYEYKVSYR  420
GEPLEHLVSY DATNQAIQCS GMNYSFAGIL CRHALTVLDK KDVRRIPSNY ILTRWSKEAK  480
SRSISSYHLD TIPNETIASA AAEHVELTMC ANEAACQLLK ILEEKKKELV KANAWVLPIS  540
NVEHVEGEEE GEEVPNARGI KRKATVGRPK TKKNMTPWSI FECS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1566574GRPKTKKNM
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018400m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445346.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0FR950.0R0FR95_9BRAS; Uncharacterized protein
STRINGXP_006292194.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-62FAR1-related sequence 5