PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017972m | ||||||||
Common Name | CARUB_v10017737mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 25776.4 Da PI: 9.2729 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.6 | 4.3e-35 | 3 | 79 | 52 | 129 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k +ekewyfF+ +d+ky+tg+r+nratksgyWkatgkdke+++ +++lvg+kktLvfykgrapkg+kt+Wvmheyrle Carubv10017972m 3 KIGEKEWYFFCVKDRKYPTGSRTNRATKSGYWKATGKDKEIFK-GKTLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 79 45789**************************************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.149 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-38 | 3 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-17 | 8 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0051091 | Biological Process | positive regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAKIGEKEWY FFCVKDRKYP TGSRTNRATK SGYWKATGKD KEIFKGKTLV GMKKTLVFYK 60 GRAPKGVKTN WVMHEYRLEG EFAIDDLPKT AKNECVISRV FHKRADGTKM HISGLMFGSG 120 VNKFEPVGLP PLMDSSLYLK NREDSLSLFS HVTCFSDQTY DDKSLVSDPL LLQEDSSILK 180 MLLDNEETQF KKNLQSSGSS ESGLTASSWH GHTPYSSGPV NLDCVWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-31 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-31 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-31 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-31 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-31 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-31 | 2 | 109 | 66 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-31 | 2 | 109 | 66 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017972m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062638 | 1e-105 | AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds. | |||
GenBank | BT008716 | 1e-105 | BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291582.1 | 1e-169 | NAC domain-containing protein 59 | ||||
Swissprot | Q9LJW3 | 1e-119 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | R0H5E2 | 1e-169 | R0H5E2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291582.1 | 1e-168 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 1e-112 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017972m |
Entrez Gene | 17886488 |
Publications ? help Back to Top | |||
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