 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Carubv10017944m |
| Common Name | CARUB_v10017944mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
LBD |
| Protein Properties |
Length: 241aa MW: 26054.5 Da PI: 7.197 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10017944m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 101.2 | 9.9e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q
Carubv10017944m 2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQ 95
6********************************************************************************************* PP
DUF260 90 lkaelall 97
+++e++l+
Carubv10017944m 96 AAVETVLR 103
**999876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC 60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLKPI PELLNGGGGF 120
AGFPSPTSDE ASEICTEMLN LRNEDSGDRN IYHHCRFSSS RSRSTASPPK RKRLTSEQPS 180
SELDLSLIPT FSIKTAPFKE DTPSMYSEES VTTVSFRDNT AGDRYVRGGG ETAKLLNLFA 240
*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY085761 | 0.0 | AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence. |
