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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017932m | ||||||||
Common Name | CARUB_v10017931mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27063.3 Da PI: 6.5154 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.4e-05 | 28 | 75 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r+++ rEr R+++N+ f eL + l + ++ Ka+iL +A++++k Carubv10017932m 28 KRVNKAVRERLKREHLNELFIELADTLELN----QQNSGKASILCEATRFLK 75 7999***********************997....566778889999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.51E-5 | 25 | 76 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-11 | 26 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.623 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-6 | 27 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVSKSPSTSS DEANVTADER CRKGKVPKRV NKAVRERLKR EHLNELFIEL ADTLELNQQN 60 SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVAT EKNELKEETS VLETEISKLQ 120 SEIEAKVNQS KPDLNTSPAP EYHHHHYQQQ HPELAAQFPG LPIFKGAGYQ QSAATLPPPA 180 TVLVLPIQPD PQTQDISEMT GHVQTQTSLM YNTSNVSKPC PRYASAADSW SSRLLGERLK 240 ANE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017932m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080786 | 0.0 | AY080786.1 Arabidopsis thaliana unknown protein (At3g47640) mRNA, complete cds. | |||
GenBank | AY114018 | 0.0 | AY114018.1 Arabidopsis thaliana unknown protein (At3g47640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291760.1 | 0.0 | transcription factor bHLH47 isoform X1 | ||||
Swissprot | Q9SN74 | 1e-151 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | R0HL65 | 1e-180 | R0HL65_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291761.1 | 1e-180 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-142 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017932m |
Entrez Gene | 17886163 |