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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Carubv10017931m |
| Common Name | CARUB_v10017931mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
bHLH |
| Protein Properties |
Length: 244aa MW: 27093.3 Da PI: 6.5154 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10017931m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 15.9 | 2.4e-05 | 28 | 75 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
+r+++ rEr R+++N+ f eL + l + ++ Ka+iL +A++++k
Carubv10017931m 28 KRVNKAVRERLKREHLNELFIELADTLELN----QQNSGKASILCEATRFLK 75
7999***********************997....566778889999999887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010106 | Biological Process | cellular response to iron ion starvation |
| GO:0055072 | Biological Process | iron ion homeostasis |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MVSKSPSTSS DEANVTADER CRKGKVPKRV NKAVRERLKR EHLNELFIEL ADTLELNQQN 60
SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT EKNELKEETS VLETEISKLQ 120
SEIEAKVNQS KPDLNTSPAP EYHHHHYQQQ HPELAAQFPG LPIFKGAGYQ QSAATLPPPA 180
TVLVLPIQPD PQTQDISEMT GHVQTQTSLM YNTSNVSKPC PRYASAADSW SSRLLGERLK 240
ANE*
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY080786 | 0.0 | AY080786.1 Arabidopsis thaliana unknown protein (At3g47640) mRNA, complete cds. |
| GenBank | AY114018 | 0.0 | AY114018.1 Arabidopsis thaliana unknown protein (At3g47640) mRNA, complete cds. |
| Publications
? help Back to Top |
- Rodríguez-Celma J, et al.
The transcriptional response of Arabidopsis leaves to Fe deficiency.
Front Plant Sci, 2013. 4: p. 276
[PMID:23888164] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Martínez-Trujillo M, et al.
Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
Plant Mol. Biol., 2014. 86(1-2): p. 35-50
[PMID:24928490] - Li H,Wang L,Yang ZM
Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency.
Gene, 2015. 554(1): p. 16-24
[PMID:25300251] - Liang G,Zhang H,Li X,Ai Q,Yu D
bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
J. Exp. Bot., 2017. 68(7): p. 1743-1755
[PMID:28369511] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786]
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