PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017657m
Common NameCARUB_v10017657mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 321aa    MW: 35657 Da    PI: 8.1999
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017657mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.61.3e-3286141460
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      ++YkeClkNhAas+Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHRreve e
  Carubv10017657m  86 IKYKECLKNHAASMGGNAIDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRREVEGE 141
                      79*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2686141IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2986138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.9E-3287138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.82288137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.17E-20213286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-31219287IPR009057Homeodomain-like
PROSITE profilePS500718.519223287IPR001356Homeobox domain
TIGRFAMsTIGR015657.2E-27225281IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEIASQEDPT PINISYGNTG GGHGNMIHHH HANSAPSALN ITSPNPLLVS LNGNGLAKTH  60
DHSHHHHHVG YNIMVNNIKK EKPVVIKYKE CLKNHAASMG GNAIDGCGEF MPSGEDGSIE  120
ALTCSACNCH RNFHRREVEG EEKAFFSPYL NNHQPPPLQR KLMFHHKMVK SPSPQQMIMP  180
IGVATAGSNS ESEDLMEEDG GGSLTFRQPQ PPPPPPPYSY GHNQRKRFRT KFTQEQKEKM  240
VSFAERVGWK MQRQEESAVQ EFCQEIGIRR RVLKVWMHNN KHNLSKKNNN VNNNVELSAG  300
NTDVNNATTE NLASTSPILS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-232262831875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017657m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0041360.0AC004136.3 Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete sequence.
GenBankAY0915150.0AY091515.1 Arabidopsis thaliana hypothetical protein At2g02540/T822.16 mRNA, complete cds.
GenBankAY7738340.0AY773834.1 Arabidopsis thaliana clone pENTR221-At2g02540 hypothetical protein (At2g02540) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291509.10.0zinc-finger homeodomain protein 3
SwissprotO647221e-177ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLR0FPG30.0R0FPG3_9BRAS; Uncharacterized protein
STRINGXP_006291509.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-160homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]