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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10017470m |
| Common Name | CARUB_v10017470mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
bHLH |
| Protein Properties |
Length: 370aa MW: 41912.9 Da PI: 7.0966 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10017470m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 43.8 | 4.7e-14 | 165 | 211 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L
Carubv10017470m 165 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 211
79*************************9.....8****************99 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0080147 | Biological Process | root hair cell development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MFVTFCLFFS NSLFSFPKNI KPKKKKKMYA MKEEDCLQTY HNLQDYQDQF LLHHHHHPQI 60
LPWSSSSSLP SFDPTHFPSN PTTRYSDPGH YFNRRASSSS SSFDYNDGFV SPPPSMDHHQ 120
NHLRILSEAL GPIMRRGSSF GFDGEIMGKL SAQEVMDAKA LAASKSHSEA ERRRRERINT 180
HLAKLRSILP NTTKTDKASL LAEVIQHMKE LKRQTSLITD SCQVPTESDD LTVDSSYNDE 240
EGNLVIRASF CCQDRTDLMH DVINALKSLR LRTLKAEIAT VGGRVKNVLF LSRDGEEEDL 300
DSYGDGMEGY DEGRMMSDRV SSIEEALKAV IEKCVHNNDE SNDNSNLEKS SSGSIKRQRT 360
SKMVNRSYN*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY086383 | 0.0 | AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ohashi-Ito K, et al.
A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
Curr. Biol., 2014. 24(17): p. 2053-8
[PMID:25131670] - Jost R, et al.
Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
J. Exp. Bot., 2015. 66(9): p. 2501-14
[PMID:25697796] - Vera-Sirera F, et al.
A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
Dev. Cell, 2015. 35(4): p. 432-43
[PMID:26609958] - Katayama H, et al.
A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
Curr. Biol., 2015. 25(23): p. 3144-50
[PMID:26616019] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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