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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017397m | ||||||||
Common Name | CARUB_v10017397mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 398aa MW: 43464.6 Da PI: 5.9068 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.1e-18 | 54 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+teEd l ++v +lG ++W++Iar ++ gR++k+c++rw + Carubv10017397m 54 KGPWSTEEDAVLTKLVSKLGARNWSLIARGIP-GRSGKSCRLRWCNQ 99 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.5e-16 | 106 | 150 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd ++ a++ +G++ W+ Ia+++ gRt++ +k++w++ Carubv10017397m 106 RKPFSDEEDRMIISAHAIHGNK-WAVIAKMLS-GRTDNAIKNHWNST 150 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.695 | 49 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-30 | 51 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-15 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 54 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 55 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-13 | 56 | 98 | No hit | No description |
PROSITE profile | PS51294 | 20.849 | 105 | 155 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 105 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 106 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.78E-12 | 108 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 108 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MEGETHQSEP LPLPSGDSDE GISAAIEAEL AELAAGDSSG GGCGGGRGVK SKVKGPWSTE 60 EDAVLTKLVS KLGARNWSLI ARGIPGRSGK SCRLRWCNQL DPSLKRKPFS DEEDRMIISA 120 HAIHGNKWAV IAKMLSGRTD NAIKNHWNST LRRKYADLWN TGSQWIPNSV TTAHIKNENV 180 EEKQQLPQGE INSPPKNNSP PNPPQVSDVI MEDAANEPQE QAPPLDSNVP PVESNVPVDS 240 NVFRPVARVG AFSVYNPTSH RNGYRDHNIV PCEGLLIQAA KPDSLAGKFL QSLYDEPHVP 300 SKCGRGCSTN PAETKFSRNS VLGPEFVDYE EPCAVFNQEL ISIATDLNNL AWIKSGLDNA 360 VVREAEQSLK IDNFNYNDPR IKFSGMMPRQ DFFCARS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-38 | 48 | 154 | 1 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017397m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF262734 | 0.0 | AF262734.2 Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA, complete cds. | |||
GenBank | AY136325 | 0.0 | AY136325.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds. | |||
GenBank | BT000092 | 0.0 | BT000092.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291267.1 | 0.0 | transcription factor MYB25 | ||||
Swissprot | O04192 | 1e-109 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | R0HGB7 | 0.0 | R0HGB7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291267.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5638 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 0.0 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017397m |
Entrez Gene | 17884747 |
Publications ? help Back to Top | |||
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