PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017043m | ||||||||
Common Name | CARUB_v10017043mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 513aa MW: 54442 Da PI: 7.2401 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.7 | 8.4e-42 | 115 | 292 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s + Carubv10017043m 115 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSLPshfrsa 208 57999***********************************************************888887776555666666633333455555 PP TCP 89 ....................................kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrikn 134 +a +s+ ++ ++ ++++s+ln+++ ++++ ++++ e ++++k r+++ Carubv10017043m 209 astfspnnifspamlqqqqqrggggggfhhhphlqgRATTSSLfPGIDNFTPTTSFLNFHNPTKQEGDQDSDElSSEKKRRLQT 292 666666666666666666677778899999999999888888889999*************99999999999966666666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-40 | 120 | 295 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.505 | 121 | 175 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MQKPTSSILN VIMDGGDNVG GGGGGDDHHR HLHHHHRPTF PFQLLGKRDP DDNHQQQPSP 60 SSSSTLFSLH QHQQLSQSQQ QQPQPQKPQP QTTQKELLQQ TQEESTAVVA AKKPPLKRAS 120 TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP SVIAATGTGT 180 IPANFTSLNI SLRSSGSSMS LPSHFRSAAS TFSPNNIFSP AMLQQQQQRG GGGGGFHHHP 240 HLQGRATTSS LFPGIDNFTP TTSFLNFHNP TKQEGDQDSD ELSSEKKRRL QTTSDLQLQH 300 QHDQIGSYTL QSSNSGSTAT AAAAQQIPGN FWMVAAAAAA AGGGNNNQTG GLMTASVGSG 360 GGGSGGEPVW TFPSINTAAA ALYRSGVSGV SGGAVSSGLH FMNFAAPMAF LTGQQQQQQQ 420 QLATTSNHEI NEDNNNNNNN NEGGGGRSDG GGGGGGGDHH SLQRHHHQQQ HHQHQHHHNI 480 LSGLNQYGRQ VSGESQASGS LGGGGDEEDP QE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 444 | 452 | GGRSDGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017043m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL132955 | 0.0 | AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2. | |||
GenBank | AY058874 | 0.0 | AY058874.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds. | |||
GenBank | AY103304 | 0.0 | AY103304.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290929.1 | 0.0 | transcription factor TCP14 | ||||
Swissprot | Q93Z00 | 0.0 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | R0FMX1 | 0.0 | R0FMX1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290929.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 1e-142 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017043m |
Entrez Gene | 17886526 |
Publications ? help Back to Top | |||
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