PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016897m
Common NameCARUB_v10016897mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 594aa    MW: 65621 Da    PI: 7.3967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016897mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08268288526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Carubv10016897m 268 PCPEFRK-GSCPKGDSCEYAHG 288
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1141186IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.78884193IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01284114IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.2E-1285186IPR020683Ankyrin repeat-containing domain
PfamPF136375.5E-585137No hitNo description
CDDcd002044.80E-1086165No hitNo description
SMARTSM00248120119154IPR002110Ankyrin repeat
PROSITE profilePS5010313.976263290IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5263289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5268289IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5268288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4295327IPR000571Zinc finger, CCCH-type
SMARTSM0035643298321IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812298322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
HQLLFLNFQD TIMCSGPKSN LCSSRILTEI ESRQKEEDTM VLLEFAACDD LDSFKRDVEE  60
KGLDLDEPGL WYCSRVGSRK MGLEERTPLM VAAMYGSLKV LTFIVSTGRS DVNRACGQER  120
VTALHCAVAG CSVNLIEVIN VLADASALVS SVDANGNQPL DVFVRVSRFV ASPRRKAVEM  180
LLRGGALGGL IDEAVEEEIK IVSKYPADAS LPDINEGVYG SDEFRMYSFK VKPCSRAYSH  240
DWTECAFVHP GENARRRDPR KYPYTCVPCP EFRKGSCPKG DSCEYAHGVF ESWLHPAQYK  300
TRLCKDETGC ARKVCFFAHK REEMRPVNAS TGSAVAQSPF SSVEMMPGLS PLAYSSGIST  360
PPVSPMANGG PSSPRNGGSW QNRVNTLTPP ALQLNGGSRL KSTLSARDID MEMEMELRLR  420
GFGNNVEETF GSYVSSPSRN SQMGQNMNQH YPSSPVRQPP PHHGFDSSAA AAVAVMKARS  480
SAFAKRSLSF KPATQVSQQS NFSDWGSPNG KLEWGVKGEE LNKMRRSVSF GIHGNNNNNN  540
NVTRDYRDEP DVSWVNSLVK DSVVPERSFG MNERVRIMSW AEQMYREKEQ TVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016897m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638320.0AL163832.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290794.20.0zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLR0FMJ30.0R0FMJ3_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006290794.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]