PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016583m
Common NameCARUB_v10016583mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 1291aa    MW: 142399 Da    PI: 6.8405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016583mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-0612691290426
                       ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                       ++C+ f+++G+C++G++C+F H+
  Carubv10016583m 1269 KICK-FYESGHCNRGASCSFWHP 1290
                       6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.5E-7105165IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.24E-7106167IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.591110176IPR019787Zinc finger, PHD-finger
SMARTSM002499.1E-7112158IPR001965Zinc finger, PHD-type
CDDcd155682.67E-19112157No hitNo description
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475924.36E-21316395IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.105.0E-24316399IPR003121SWIB/MDM2 domain
SMARTSM001513.5E-4317399IPR019835SWIB domain
PfamPF022014.4E-13323394IPR003121SWIB/MDM2 domain
PROSITE profilePS5136019.601453586IPR004343Plus-3 domain
SMARTSM007195.4E-47453563IPR004343Plus-3 domain
SuperFamilySSF1590427.85E-26454583IPR004343Plus-3 domain
PfamPF031265.6E-18458561IPR004343Plus-3 domain
SuperFamilySSF552773.92E-16726782IPR003169GYF domain
PROSITE profilePS5082915.6729783IPR003169GYF domain
CDDcd000726.58E-19729786No hitNo description
SMARTSM004447.9E-15730785IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.0E-16731783IPR003169GYF domain
PfamPF022132.7E-11731775IPR003169GYF domain
PROSITE profilePS5010314.18312651290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-612651289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-412691289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1291 aa     Download sequence    Send to blast
MENQQKQLQQ GVPELASLTA REESSVRGID LMRVDQCDEI GVNQVPALSV PASTVAGTVP  60
VPVSIGQEVK VVDEAAPVKR KRGRPPRALA NTPLHTRPLP PPPRKEDKEE DVCFICFDGG  120
DLVLCDRRNC PKAYHPACIK RDEAFFRTTA KWNCGWHICG TCQKASSYMC YTCTFSVCKR  180
CIKDADYVIV RGNMGLCGTC IKPIMLIENI AQGDKEAVKV DFDDKLSWEY LFKVYWLCLK  240
EDLSLTVDEL TRANNPWKEV SNSAPQVESR NDLTNNRGLD VAVNGTKRRR TSDSPTLPSK  300
LDGKKPNNIL KKAPGDTCWA TKELLEFVSF MKNGDTSVLS QFDVQGLLLD YIKKKDLRDP  360
LQKSQVICDL MLVKLFGKQR VGHFEMLKLL ESHFLIQEKP KDVKTTNGDT THAVPSQIEE  420
DNVHDSTVRD RRRKMRRKTD GRVQNENLDA LAAIDVHNIN LIYLRRKYLE SLLDDINKVH  480
EKVVGTILRI KVSGSDQKLD IHRLVQVVGT SKATASYQLG AKTTDVLLEI LNLDKREVIS  540
MDQLSDQNVT EDECKRLRQS IKNGLNKRLT VGDILKTAAT LQDMRIDEAL KAEILKLNHL  600
RDRASEKGHR KELRECVEKL ELLQSPEERQ RLLEEVPEVH IDQSMDPSHP SSEDAGLGTR  660
KQDNHIKAQS KGLHKKGAIL NNVGNNTQKK YDAPILRSRN AVHGDKDDFS KVHNNSSNIQ  720
ETGRDDEENE IWHYRDPTGK TQGPFSMVQL RRWKSSGHFP PYLKIWKAHE NQDESVLLTN  780
ALAGRFDKAI TLPSSSSLPQ ELKPSPHDSV LDVNCVQKNH TLVNTGALSN DLKEKEVVAL  840
VACSGNVEGD NSVCPQPQVS CPVSISVVPG HVVTPDVRET PVPDLSNAVQ ADGNHSTTMK  900
VEDGTNSGSI PINGSVQAPN LNQESHFLDF PSPTPKSSPE DLEAQAAETI QSLSSCVLVK  960
GPSGVTWSTT TTPTTDATTT MSSLVVTGGK LPQVTQQNAV VIAAPSVKSI NLAADHATTT  1020
QTSENTQVAQ SSGWPAIVAD PDECDESVSD LLAEVEAMEQ NGLPSSPTST FHCDDDDDLT  1080
KGPEKDFFNP MSRMALTPET CRMDVSQASI LHNVSVGKSS MGTEAKENTP FNHCGTAGPE  1140
LLLFAPPTPA STPTSISHDL TLTTTALRLG SETTVEAGPL VERLPKSGSE PSPRVLSSHD  1200
SARGNTERSP RGSQHKRSSG HSRDRQWLNH GHHNSFNNSH NNRQWPYSNS HGYEHGSGSY  1260
AAHPPKGLKI CKFYESGHCN RGASCSFWHP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A2e-13108180473Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific
4gnd_A3e-131101791581Histone-lysine N-methyltransferase NSD3
4gnd_C3e-131101791581Histone-lysine N-methyltransferase NSD3
4gne_A3e-131101791581Histone-lysine N-methyltransferase NSD3
4gnf_A3e-131101791581Histone-lysine N-methyltransferase NSD3
4gng_A3e-131101791581Histone-lysine N-methyltransferase NSD3
4gng_D3e-131101791581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016583m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329800.0AL132980.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290505.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLR0HHW80.0R0HHW8_9BRAS; Uncharacterized protein
STRINGXP_006290505.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding