PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016096m
Common NameCARUB_v10016096mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 289aa    MW: 32497 Da    PI: 7.8752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016096mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-10170216455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++n +  +RR +i +++ +L +l+P+      +K+s a+iLe++ +YIk Lq
  Carubv10016096m 170 NANDVVVNRRTKISDKIRTLEKLMPWE-----RKMSLAMILEEVHKYIKFLQ 216
                      56777779******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.303166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7170216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0027170221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-5177220No hitNo description
SuperFamilySSF474592.88E-9177224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9179222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEISAYEFDS LTDLPPLPQE YKPNIDYSRI SLDSLPPFPP SDFAPSSDNH HHLLDSSSLS  60
LSDSLFLDST LSLLNRHHLA ESTRLEQIFY EPTRFDHHLF PNDAAAPFLH LPDLKSIEQT  120
TTAVEEPKTM KLFPSPSRPA PLPAAKRQRK LHSSSSSTTS GSPTASSSQN ANDVVVNRRT  180
KISDKIRTLE KLMPWERKMS LAMILEEVHK YIKFLQSQIA SLRWMPLESV YNTAGEVGEP  240
NLLKSLTRQQ ILQVLANSPG SRNVLSTRRV CVFSYEQLLT LKAMSRNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016096m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299889.10.0transcription factor bHLH117
SwissprotQ9LRJ41e-107BH117_ARATH; Transcription factor bHLH117
TrEMBLR0GAQ10.0R0GAQ1_9BRAS; Uncharacterized protein
STRINGXP_006299889.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]