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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Carubv10015986m |
Common Name | CARUB_v10015986mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
M-type_MADS |
Protein Properties |
Length: 403aa MW: 44844.5 Da PI: 9.6683 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Carubv10015986m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 70.2 | 1.9e-22 | 38 | 87 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+++++s + +++ kR+++++KKA ELSvLC++ev+vi ++ +g+l+++++
Carubv10015986m 38 SSSSSSSKATSLKKRQETVFKKAGELSVLCGIEVCVICYGADGELKTWPK 87
78999*******************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MVSFSSCSPS YSSSAKKKTT MSIPQIQQTL FKKPSYASSS SSSSKATSLK KRQETVFKKA 60 GELSVLCGIE VCVICYGADG ELKTWPKERE KVKAIAQRYA ALSETKRRKG SVDLHEFLEK 120 INNDDSKKKT KKKKVRRVPK VKYPVWDPRF DNYSVEQLTG LIQSLERNLT RIQHRVRAVV 180 EGQGQRKIQY LSMANQGPML PSTMNQYLQQ QPNQVSMFLF NHGNGNISQI PVSASALNQG 240 QSLAPVPPEL MIYPNLDVGN YSGSLGVQGT GISGFQNMNM NMLAYNNINS FDGFSKQIDQ 300 NSKVESYSSL LGAGIDELED TNMYNHNNVN TGDYSGLLGT QGIVTNELNM SMHDYNNNNS 360 VNANGLSHQF GQFQTQQQQG AFNWDQPGNN FRPLYDLPQP LL*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |