PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015985m
Common NameCARUB_v10015985mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 197aa    MW: 21688.4 Da    PI: 10.8135
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015985mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.71.2e-08159183428
                      XCHHHCHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaei 28 
                      ++r +r++kNRe+A rsR+RK++++
  Carubv10015985m 159 DRRHKRMIKNRESAARSRARKQERV 183
                      799********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-5160184No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLSSAKHNKI NHSAFSVSSS SSSSQGQNKS QVTMEEVWKE INLGSLHYHR QVNIGHEPML  60
KNQNPNNNSI FQDFLNMPLK QQPPLPPSSS SSIVTALYGS PLPIPPPATV LSLNSGVGFK  120
FLDNTDTLVA SNPNSFEGSA RFGCFGKKRG QDSDGSRGDR RHKRMIKNRE SAARSRARKQ  180
ERVSLSLLFH FQIPLD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015985m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299789.21e-131bZIP transcription factor 27
SwissprotQ7PCC61e-90FDP_ARATH; bZIP transcription factor 27
TrEMBLR0GAE81e-141R0GAE8_9BRAS; Uncharacterized protein
STRINGXP_006299789.11e-142(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.11e-80basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]