PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015980m
Common NameCARUB_v10015980mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 110aa    MW: 12644.7 Da    PI: 8.7364
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015980mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.52.5e-299107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +C+ C +++++C+k+C +++yfp e + +++ ++ lFG+ n++k+++++pe+e++++++s++ e++a+++dPv+G +g++++l ++   +ka l
  Carubv10015980m   9 PCCICITKNKNCPKNCEFSEYFPYELKDQYESANNLFGTPNIIKTMRRAPEKEKQMLATSIIVEGNAWTKDPVRGGFGMVRNLMWKTVLHKAYL 102
                      7********************************************************************************************9 PP

           DUF260  95 allke 99 
                      ++l+e
  Carubv10015980m 103 HELEE 107
                      99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.9488109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-239105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MEALRKNGPC CICITKNKNC PKNCEFSEYF PYELKDQYES ANNLFGTPNI IKTMRRAPEK  60
EKQMLATSII VEGNAWTKDP VRGGFGMVRN LMWKTVLHKA YLHELEEKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015980m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299784.24e-77LOW QUALITY PROTEIN: LOB domain-containing protein 8
SwissprotQ9ZUP03e-54LBD8_ARATH; LOB domain-containing protein 8
TrEMBLR0GAE32e-76R0GAE3_9BRAS; Uncharacterized protein
STRINGXP_006299784.14e-77(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19510.11e-56LOB domain-containing protein 8