PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10015798m

Common Name

CARUB_v10015798mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 287aa MW: 32036.4 Da PI: 7.3914

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10015798m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.5e-14	27	115	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 +W+++ + +Li+a e+ +l+rg+lk+ +W+ev++ + r+ ++ +qCk++++ ++k++k++k+ + ++ s++ +f++l+ Carubv10015798m 27 CWSEEATETLINAWGERFLKLKRGNLKQEHWKEVAEIVdRDNETAKTDTQCKNRIDTVKKKFKQEKAKVAAGggDEDCNSKWIFFEKLQ 115 7***********************************888899****************99876655346778889***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-22	26	116	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
TSVVGRSVNR EVLCSGGRTG GGGRDDCWSE EATETLINAW GERFLKLKRG NLKQEHWKEV 60 AEIVDRDNET AKTDTQCKNR IDTVKKKFKQ EKAKVAAGGG DEDCNSKWIF FEKLQHLIGG 120 ATTASKALKV TPLSSRSNLY QRQAKSFSTG VKRSGGGDST RWHFRKRVAS ETESESEPDL 180 SADSVDSLPQ PLLLPLPVDV DNKTEPGEVA MAILGFAESY EKVETLKLKQ MVELERERMK 240 FVKELELQRM QFFTAQLEML RNSLEIEKVK EESGVTMTIV SIITAM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	22	GGRTGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269\|PubMed:19155348, ECO:0000269\|PubMed:21330492, ECO:0000269\|PubMed:22231199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10015798m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641742.1	0.0	trihelix transcription factor ASIL1
Swissprot	Q9SYG2	3e-74	ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBL	R0I7T6	0.0	R0I7T6_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006299620.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8910	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	1e-68	6B-interacting protein 1-like 1

Link Out ? help Back to Top
Phytozome	Carubv10015798m
Entrez Gene	17893690