![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10015354m | ||||||||
Common Name | CARUB_v10015354mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 314aa MW: 35558.9 Da PI: 8.006 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.8 | 2.1e-21 | 15 | 64 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + +n+s ++ +s+R+++i+KKA+ LS+LCd+ev+vi +++ g+l+++++ Carubv10015354m 15 SCSNSSSSSTRLSNRLETIFKKASQLSILCDIEVCVIHYGTGGELQTWPK 64 679*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 16 | No hit | No description |
SMART | SM00432 | 0.0054 | 14 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-14 | 18 | 98 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.806 | 18 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-12 | 18 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.50E-14 | 29 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MRSLSSSSSL PSSSSCSNSS SSSTRLSNRL ETIFKKASQL SILCDIEVCV IHYGTGGELQ 60 TWPKEREKVR DMALKYSQLN ETLRRKKRVD LHGFLNEQKH KGLENLNQKR MTTSLEKKPV 120 DVLKYPISDH YSPNKISKLI QSLELNVSKL QERLRFVDSQ KLQSLAPSSL NHQTQSLNPS 180 QFSLFMYNHG SNTLSQIPVS VSNLNQDFTA LLQESQLKNQ LMKQELCDYD QNINMSDMYI 240 TNNSFQHPCV SNKETVQESV NNFGSMNQLM QKECNGGDKN LFTSDITNSN LPDHSLSNTV 300 SYEFCSDTCG NNMV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10015354m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299208.2 | 0.0 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 1e-120 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | R0G9A2 | 0.0 | R0G9A2_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006299208.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41200.1 | 1e-121 | AGAMOUS-like 75 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10015354m |
Entrez Gene | 17891577 |
Publications ? help Back to Top | |||
---|---|---|---|
|