PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015354m
Common NameCARUB_v10015354mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 314aa    MW: 35558.9 Da    PI: 8.006
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015354mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.1e-211564251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     + +n+s  ++ +s+R+++i+KKA+ LS+LCd+ev+vi +++ g+l+++++
  Carubv10015354m 15 SCSNSSSSSTRLSNRLETIFKKASQLSILCDIEVCVIHYGTGGELQTWPK 64
                     679*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575116No hitNo description
SMARTSM004320.00541465IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-141898IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.8061866IPR002100Transcription factor, MADS-box
PfamPF003192.4E-121862IPR002100Transcription factor, MADS-box
CDDcd002661.50E-142990No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRSLSSSSSL PSSSSCSNSS SSSTRLSNRL ETIFKKASQL SILCDIEVCV IHYGTGGELQ  60
TWPKEREKVR DMALKYSQLN ETLRRKKRVD LHGFLNEQKH KGLENLNQKR MTTSLEKKPV  120
DVLKYPISDH YSPNKISKLI QSLELNVSKL QERLRFVDSQ KLQSLAPSSL NHQTQSLNPS  180
QFSLFMYNHG SNTLSQIPVS VSNLNQDFTA LLQESQLKNQ LMKQELCDYD QNINMSDMYI  240
TNNSFQHPCV SNKETVQESV NNFGSMNQLM QKECNGGDKN LFTSDITNSN LPDHSLSNTV  300
SYEFCSDTCG NNMV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015354m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299208.20.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-120AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLR0G9A20.0R0G9A2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006299208.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-121AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]