PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015321m
Common NameCARUB_v10015321mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 456aa    MW: 49106.8 Da    PI: 10.2841
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015321mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.41.1e-1487174186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk++k +   +  + +s++++fd+l+
  Carubv10015321m  87 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVssreDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIATG--GGRSRWVFFDKLD 174
                      7*************************************8766667789999******************999987..66678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2585176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEDDEDIRSR GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPANSSQKD PDALALALLP  60
IQASGGSGGG ANSSSGRPTG GGGREDCWSE GATAVLIDAW GERYLELSRG NLKQKHWKEV  120
AEIVSSREDY GKIPKTDIQC KNRIDTVKKK YKQEKVRIAT GGGRSRWVFF DKLDRLIGST  180
AKISTATPGV SGGGGPGVGG GLHKIPMGIP MGTRSNLYHQ QAKAAAATPS FNNLDRLIGA  240
TARVSAASFG GSSGGGGGSV NVPMGIPMSS RSSPFGQQGR TLPQQSRMLP QQQQQGMVVK  300
RCNESKRWRF RKRNASESDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKR QDGDGVGNKW  360
RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKEME LQRMQFFVKT QLEISQLKQQ  420
DGGRLGNTTS NDHHSRKNNN INGIVNNSNN NVGNN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015321m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006000.0AP000600.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2.
GenBankAY0721870.0AY072187.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankAY1138530.0AY113853.1 Arabidopsis thaliana unknown protein (At3g14180) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299177.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0I2F40.0R0I2F4_9BRAS; Uncharacterized protein
STRINGXP_006299177.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.10.0sequence-specific DNA binding transcription factors