PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015016m
Common NameCARUB_v10015016mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 83aa    MW: 9443.36 Da    PI: 9.5276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015016mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-101560346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+  d+++  a + + ++   +W  +ar +g g++++++k ++  
  Carubv10015016m 15 SWTAKQDKQFEMALATYDKDtpdRWQNVARAVG-GKSAEEVKRHYEL 60
                     7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.8121166IPR017884SANT domain
SMARTSM007171.8E-91264IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-131470IPR009057Homeodomain-like
PfamPF002495.7E-81560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-51568IPR009057Homeodomain-like
CDDcd001671.96E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASNSMSTSR SSNSSWTAKQ DKQFEMALAT YDKDTPDRWQ NVARAVGGKS AEEVKRHYEL  60
LLRDVNDIES GRYPQPRYRN TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015016m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064391e-66AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026851e-66CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4876601e-66DQ487660.1 Arabidopsis thaliana clone 0000013653_0000009781 unknown protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298896.19e-56protein RADIALIS-like 4
SwissprotQ1G3C42e-39RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLR0HPU62e-54R0HPU6_9BRAS; Uncharacterized protein
STRINGCagra.14142s0003.1.p4e-55(Capsella grandiflora)
STRINGXP_006298896.14e-55(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.16e-41RAD-like 4