PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014950m
Common NameCARUB_v10014950mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 119aa    MW: 14329.4 Da    PI: 9.4593
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014950mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind61.62e-1981032102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHH..HHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldeeef..akkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F k +ye+++d++ +++isw +++nsfv+ d+eef   +k + + F  +nf+ F+  Ln YgFk+++++++        weF +k+F kg+ el
  Carubv10014950m   8 FYKCIYEMVNDPSSDSIISWGKSNNSFVINDQEEFirRNKKMFSRFFCRNFTEFISRLNFYGFKQMNESSGL-------WEFGDKYFVKGRPEL 94 
                      78889******************************44234555667789*******************9987.......*************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkks 102
                      + +++++ s
  Carubv10014950m  95 MVEMHKRVS 103
                      **9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.31E-214100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-234101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-23596IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-188100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-6831IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-66173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
YPESCLRFYK CIYEMVNDPS SDSIISWGKS NNSFVINDQE EFIRRNKKMF SRFFCRNFTE  60
FISRLNFYGF KQMNESSGLW EFGDKYFVKG RPELMVEMHK RVSMKRFAES SKQMEANAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014950m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415704.15e-57PREDICTED: heat stress transcription factor A-4c-like
TrEMBLR0G8963e-82R0G896_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006298838.15e-83(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-23HSF family protein