PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014770m
Common NameCARUB_v10014485mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 175aa    MW: 17827 Da    PI: 10.0439
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014770mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.53.9e-12140165127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt++C +f++ G C +GdrC+FaHg+
  Carubv10014770m 140 YKTKICERFSK-GNCTFGDRCHFAHGE 165
                      9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547911.42E-1527108IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.0E-1637106IPR004088K Homology domain, type 1
SMARTSM003221.8E-1137107IPR004087K Homology domain
PROSITE profilePS5008414.5538102IPR004088K Homology domain, type 1
CDDcd001058.11E-1340102No hitNo description
PfamPF000132.4E-1240104IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-16134169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.215139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-9139169IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-8139165IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9140165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTNMGPPMPQ VSRNMGGGGR FSGRGESGPG HVSSFGASAT AKISVDASLA GAIIGKGGVS  60
SKQICRQTGA KLSIQDHERD PNLKNIELEG TFEQINEASA MVRELIGRLN SAAKKPPGGG  120
GGGGGGGMGS EGKPHPGSNY KTKICERFSK GNCTFGDRCH FAHGEAELRR SGIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014770m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0694731e-179AC069473.4 Arabidopsis thaliana chromosome 3 BAC T21B14 genomic sequence, complete sequence.
GenBankAK2273731e-179AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23.
GenBankAP0020631e-179AP002063.2 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T23B7.
GenBankAY0857461e-179AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
GenBankBT0250321e-179BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds.
GenBankCP0026861e-179CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298415.11e-123zinc finger CCCH domain-containing protein 36 isoform X2
SwissprotQ9C7C32e-97C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLR0I4P51e-121R0I4P5_9BRAS; Uncharacterized protein
STRINGCagra.0430s0043.1.p1e-121(Capsella grandiflora)
STRINGXP_006298416.11e-121(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-76C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]