PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014621m | ||||||||
Common Name | CARUB_v10014621mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 24424.7 Da PI: 8.4863 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.3 | 1.5e-29 | 47 | 136 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ +GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka ++vk+ek+gkw+vtk+++eHnH+l+p Carubv10014621m 47 SFYDSYATVMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRLRPRR-SESRKPRAITREGCKALIVVKREKSGKWVVTKFVKEHNHPLSP 136 5********************************************99.9***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-28 | 47 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEEHSQPEEE EEMMESSDGK YIVTNETSPL VEPFIGMEFE SEASAKSFYD SYATVMGFVM 60 RVDAFRRSMR DGTVVWRRLV CNKEGFRRLR PRRSESRKPR AITREGCKAL IVVKREKSGK 120 WVVTKFVKEH NHPLSPNVGR SSQLSQTPKD AKIRELSAEL SRERKRCAAL QQQLDMVLEE 180 MEEHSNHLST NINNVIQSVR EIESTTFTKP L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014621m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT004031 | 1e-171 | BT004031.1 Arabidopsis thaliana clone RAFL15-31-E07 (R20864) unknown protein (At3g07500) mRNA, complete cds. | |||
GenBank | BT005083 | 1e-171 | BT005083.1 Arabidopsis thaliana clone U20864 unknown protein (At3g07500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642497.1 | 1e-142 | protein FAR1-RELATED SEQUENCE 5 isoform X3 | ||||
TrEMBL | R0G2U4 | 1e-154 | R0G2U4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296738.1 | 1e-155 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-107 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014621m |
Entrez Gene | 17893329 |