PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10014439m

Common Name

CARUB_v10014436mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 259aa MW: 28340.9 Da PI: 6.9639

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10014439m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.4	7.2e-09	85	131	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N +L k+l+ Carubv10014439m 85 KSKKRPLGNREAVRKYREKKKAKAASLEDEVMRLRAVNNQLMKRLQG 131 66788899**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.0E-14	78	149	No hit	No description
SMART	SM00338	7.4E-10	81	148	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.806	83	130	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.1E-14	84	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.95E-7	86	130	No hit	No description
CDD	cd14686	6.89E-11	89	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDDGELEFSN SNMGGELPLT SCSMDSFFDE LLRDSHACTH THTCNPSGPE NTHTHTCLHV 60 HTKILPAQSE DKVSTDDTSE SSGKKSKKRP LGNREAVRKY REKKKAKAAS LEDEVMRLRA 120 VNNQLMKRLQ GQAALEAEVT RLKCLLVDIR GRIDGEIGSF PYQKPAAANV PYSYMMHPCN 180 MQCDVDNMYC LQNGNNGEGT LMNEQGLNGC EFDQLECLAN QNLAGKEIPL CSNGVGTFTV 240 NGSSTNKRKG GHRAAKAV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10014439m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117479	0.0	AK117479.1 Arabidopsis thaliana At2g16770 mRNA for putative bzip transcription factor atbzip23, complete cds, clone: RAFL17-09-E13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298365.1	0.0	basic leucine zipper 23
Refseq	XP_023641855.1	0.0	basic leucine zipper 23
Swissprot	Q8GTS2	1e-173	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	R0HNF1	0.0	R0HNF1_9BRAS; Uncharacterized protein
STRING	Cagra.0839s0005.1.p	0.0	(Capsella grandiflora)
STRING	XP_006298365.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-169	bZIP family protein

Link Out ? help Back to Top
Phytozome	Carubv10014439m
Entrez Gene	17892617

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]