PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014421m
Common NameCARUB_v10014421mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 263aa    MW: 29946.5 Da    PI: 5.5134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014421mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93.1e-1428108286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W+++ + +Liea  ++  +l+rg+l++++W+ev++++   ++ g  ++ +qCk++++ l+k+yk +k+   +       ++ +fd+l+
  Carubv10014421m  28 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVnssHRNGRPKTDVQCKNRIDTLKKKYKTEKAKPLS-------SWCFFDRLD 108
                      *************************************999999**********************9987664.......388888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-2526109No hitNo description
SMARTSM005950.003935115IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
METTPETQPK PHQQSGSHRL PAGREDWWSE DATATLIEAW GDRYVNLNRG NLRQNDWKEV  60
ADAVNSSHRN GRPKTDVQCK NRIDTLKKKY KTEKAKPLSS WCFFDRLDFL IGPAVKKPSG  120
GVVKSALMNP NLNPTGSKST GSSLDDDDDD DEEDDDDDDA GDWGFVVRKH RRVEDVDPSE  180
GSAFRELARS ILKLGEAFER IEGKKQQMMI ELEKQRMEVA KDLELQRMNM LMEMQLELEK  240
SKHGKRRACS ALWNLQDKTL VT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014421m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546080.0AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298354.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG88e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0G7120.0R0G712_9BRAS; Uncharacterized protein
STRINGXP_006298353.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-131sequence-specific DNA binding transcription factors