PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 263aa MW: 30329.2 Da PI: 8.8825

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10014420m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.5	1.6e-15	125	214	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l lp +f+++h k ++ +tl de+ +++ k+ ++k++ l++GW++F +++L +gD vvF+l+ ++f +v Carubv10014420m 125 FVKPMLQSHVTGGFWLGLPLRFCKTHLPK--RDEWMTLVDEEDEEFVAKYLVEKNG----LSGGWRGFSIDHQLVDGDAVVFHLITPTTF--KV 210 89*******************999433..4558***********777777....*********************9976666..88 PP EEE- CS B3 95 kvfr 98 ++r Carubv10014420m 211 YIIR 214 8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-19	116	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-24	118	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.44E-24	123	214	No hit	No description
Pfam	PF02362	7.8E-14	125	214	IPR003340	B3 DNA binding domain
SMART	SM01019	5.9E-20	125	216	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.644	125	216	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVESELSYEQ IRLKRVEENK KRMGELNLNK LAQSLRVSSS PKPSPSKTRT MRMPVDFSEV 60 RRSSRAKGPP PSYKEFGLEP LERPRRSYQR RDLLNRVYAS DEARVYAVDR AEKLQSSLDP 120 EFPSFVKPML QSHVTGGFWL GLPLRFCKTH LPKRDEWMTL VDEEDEEFVA KYLVEKNGLS 180 GGWRGFSIDH QLVDGDAVVF HLITPTTFKV YIIRVNDDGN NDSDVNEEDE EDDIDINKKE 240 KEHVSEARQL RSSGKRKRGG RK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10014420m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493621	0.0	AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBank	DQ487561	0.0	DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298352.1	0.0	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	1e-145	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	R0I040	0.0	R0I040_9BRAS; Uncharacterized protein
STRING	XP_006298352.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-121	B3 family protein

Link Out ? help Back to Top
Phytozome	Carubv10014420m
Entrez Gene	17890973

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]