PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014328m | ||||||||
Common Name | CARUB_v10014328mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 285aa MW: 31329.4 Da PI: 7.1653 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 3e-14 | 46 | 90 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Carubv10014328m 46 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 90 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-17 | 40 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 41 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 44 | 96 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-19 | 44 | 93 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-11 | 45 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-12 | 46 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-9 | 48 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0032922 | Biological Process | circadian regulation of gene expression | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSSSPSRNPT NAEAPLPPST SSTDAVAVEV GSSKKVRKPY TITKSRESWT EEEHDKFLEA 60 LQLFDRDWKK IEDFVGSKTV IQIRSHAQKY FLKVQKNGTL AHVPPPRPKR KAAHPYPQKA 120 PKNAQMPIQV STSFTTQNSD MLGYTSWDDA SMLLNRVISP QQELANLLGP EADIGSKGIL 180 NVTSPSTSGM GSSSRTVSGS EIVRKSKQPP MLHAVPDFSE VYNFIGSVFD PETRGHVEKL 240 KEMDPINFET VLLLMRNLTV NLSNPDFESA SDCNDTAEAS PLII* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00338 | DAP | Transfer from AT3G09600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014328m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ937213 | 0.0 | AJ937213.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like5 (lcl5 gene), variant 1. | |||
GenBank | AY550307 | 0.0 | AY550307.1 Arabidopsis thaliana MYB transcription factor (At3g09600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641439.1 | 0.0 | protein REVEILLE 8 isoform X2 | ||||
Swissprot | Q8RWU3 | 1e-178 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | R0G6D6 | 0.0 | R0G6D6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298264.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9303 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.2 | 1e-161 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014328m |
Entrez Gene | 17892829 |
Publications ? help Back to Top | |||
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