PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10014323m

Common Name

CARUB_v10014323mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 286aa MW: 30255.8 Da PI: 6.4157

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10014323m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8e-05	162	202	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Carubv10014323m 162 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 202 668889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.4E-8	149	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-12	150	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.138	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-4	160	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGDNNTAEDH EDLAMVGGEG VTSFSELLMF SEGVLSSSDH QREGSSSGGG DGGEDSLGFV 60 FSGKTGSRML CFSGGYQNDD ASLFLEPSLL SSGVSVATDP SCIKIDVCKK NSNDDCTLDK 120 STKPSNKKKP GKGKEYDPDH NLKPGKKCKR NQDKSSSLGI AKVRKERLGE RIAALQQLVS 180 PYGKTDAASV LHEAMGYIKF LQDQIQVLCS PYLINHTLVD GGGVVTGDVM AAMKAKDLRS 240 RGLCLVPVSS TVHVENSNGA DFWSPATMGH STTSPSTTTL HHQGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10014323m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298260.1	0.0	transcription factor bHLH113
Swissprot	Q9LT67	1e-149	BH113_ARATH; Transcription factor bHLH113
TrEMBL	R0I4A7	0.0	R0I4A7_9BRAS; Uncharacterized protein
STRING	XP_006298260.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-127	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10014323m
Entrez Gene	17893209

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]