PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014025m
Common NameCARUB_v10014025mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 364aa    MW: 40372.9 Da    PI: 6.348
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014025mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08124144526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C F+Hg
  Carubv10014025m 124 ACPDFRK-GGCKRGDACEFSHG 144
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.1E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4123146IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6124144IPR000571Zinc finger, CCCH-type
SMARTSM003565.7154177IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.348154178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMIGEPHRVF NPTVHIPPWP LTTEDLTASD VYGSPDGGNS MIEALAALQR YLPSNEPDPD  60
SDPDLSGPDS PIDAYSCDHF RMYEFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCKRGDACE FSHGVFECWL HPARYRTQPC KDGANCRRRV CFFAHSPDQI  180
RVLPNQSPDR VDSFDGLSPI RRAAAAYQFS ISPSSNTPPM SPRGDDADSS CSLLSRSLGS  240
NVGNDVVASM RNLQLNKLEH LSSSYNSNQI GGYGSGFGSP RGSLLGPGFR SLPNTPTRPG  300
FMNIWENVQE EEPAMERVES GRELRAKLFE KLSKENRMGR VDPDPEQETG DAPDVGWVSD  360
LVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014025m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297982.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821990.0C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLR0HZ650.0R0HZ65_9BRAS; Uncharacterized protein
STRINGXP_006297982.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-180C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]