PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014004m | ||||||||
Common Name | CARUB_v10014004mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 367aa MW: 40504.8 Da PI: 4.9743 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.2 | 3.4e-32 | 55 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptde+++ e+L++k+ + + e vi++v+i++++P++Lp ++++ +++fF+k+ ++y tg+rk+r+ Carubv10014004m 55 LPKGVKFEPTDEDII-EFLEAKCGLGDsqphvlI---EefirpVIEDVGINYTHPQNLP-GANKDGVSVFFFHKTVQAYGTGQRKRRKitptlv 143 799************.9*****987775555552...1455657***************.445566799******************7455555 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+yk + +k+ek++Wv+h+y+l Carubv10014004m 144 nDEPVRWHKTGRTKPVML-NGIQRGCKKIMVLYKSarKGSKPEKSNWVLHQYHL 196 433788************.99************5433666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-37 | 40 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.255 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-13 | 56 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MARAWIIDGR GIATKVKNAS LSSALQIQDC GAHIKCPNCS YRIDNSNVLL PWPGLPKGVK 60 FEPTDEDIIE FLEAKCGLGD SQPHVLIEEF IRPVIEDVGI NYTHPQNLPG ANKDGVSVFF 120 FHKTVQAYGT GQRKRRKITP TLVNDEPVRW HKTGRTKPVM LNGIQRGCKK IMVLYKSARK 180 GSKPEKSNWV LHQYHLGTEG QEIGDYVVSK ITYQQPKLGE IPDEGESSGV RGGPRTPKTN 240 TPTPPRPVEG VAGDEEAFDD LKMFDPFIEG LDSIPEAALG KMWSKKARMD EEDFVVNLSE 300 DSLTCNESIE ASSVWEDQVL PNPSLGTIGE FDGFSISDLE NADLGTPPDF LTLASQESLL 360 NWIGWL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014004m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009325 | 0.0 | AC009325.8 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297963.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 7e-74 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | R0G621 | 0.0 | R0G621_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297963.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 0.0 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014004m |
Entrez Gene | 17890974 |