PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014000m | ||||||||
Common Name | CARUB_v10014000mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 41909.8 Da PI: 9.0483 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 8.5e-53 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + + Carubv10014000m 10 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAV 102 79****************************.89***************988899***************************************9 PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e++g+kk Lvfykg+ pkg+kt+W+mheyrl Carubv10014000m 103 AngegFHENIGIKKALVFYKGKPPKGVKTNWIMHEYRL 140 855444455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-62 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.071 | 10 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-28 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVANGEGFHE NIGIKKALVF 120 YKGKPPKGVK TNWIMHEYRL AESFSPKRAN SSSSKVNNFG DRNLKSKEYS MRLDDWVLCR 180 IYKKSHASLS SSDVPSVTSN QEHEEKHNKP YVDRETVLPN LQQQNDQPLK RQKSSCSFSN 240 LLDATDLTFL TNFLNETPDI RTDDQSDFSF TIGNFSNPDM YGNHYLDQKL PRLSSPASET 300 SGVGNKRERS LDFAEETMNN TSKKTMMMNT YSYNNSVDHL DHGMIQQSSF LNQELLMSSS 360 HFQYQGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-71 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 6e-71 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-71 | 9 | 188 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-71 | 9 | 188 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014000m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227417 | 0.0 | AK227417.1 Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22. | |||
GenBank | BT005985 | 0.0 | BT005985.1 Arabidopsis thaliana At3g04070 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297959.1 | 0.0 | NAC transcription factor 47 | ||||
Swissprot | Q84TD6 | 0.0 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | R0G5M7 | 0.0 | R0G5M7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297959.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 0.0 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014000m |
Entrez Gene | 17893195 |
Publications ? help Back to Top | |||
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