PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013924m
Common NameCARUB_v10013924mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 386aa    MW: 41306.9 Da    PI: 8.3965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013924mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Carubv10013924m 131 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 175
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576135No hitNo description
Gene3DG3DSA:4.10.60.105.4E-4227IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.581124180IPR017930Myb domain
SuperFamilySSF466898.22E-17126180IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-18127178IPR006447Myb domain, plants
SMARTSM007171.7E-10128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-11130174IPR009057Homeodomain-like
CDDcd001673.30E-9131176No hitNo description
PfamPF002494.8E-11131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGGTCGGG GGGSCSSSAV KLFGVRLTDG SIIKKSASMG  60
NLSALAVAAA AATHHRLSPS SPLATSNHND SPLSDHARYS SLHHNEGYLS DDPAHGSGSS  120
HRRGERKRGV PWTEEEHRLF LVGLQKLGKG DWRGISRNYV TSRTPTQVAS HAQKYFIRHT  180
SSSRRKRRSS LFDMVTDEMV TDSSPTQEDQ NVNRSSPSKE PENKSYLPSL ELSLNNTMEP  240
EAVIATAPPQ EKPEEAIEPS NGVSPMLVPG GFFPPCFPVT YTIWLPATST SLQGTEHALE  300
AETSSQQHQV LKPKPEFAKE RVNMDELVGM SQLSIGMATK HETETSPSPS PLSLKLEPSR  360
PSAFHSNGSV SGADLSKGNS AIQAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013924m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0058320.0BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297882.10.0transcription factor MYBS3
TrEMBLR0HYV30.0R0HYV3_9BRAS; Uncharacterized protein
STRINGXP_006297882.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein