PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013801m
Common NameCARUB_v10013801mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CPP
Protein Properties Length: 419aa    MW: 46210.1 Da    PI: 5.2516
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013801mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.4e-1662102242
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      ++kgC+Ck+skClk+YC+Cfa+g  C+++C C dC+N++e+
  Carubv10013801m  62 KHKGCRCKQSKCLKLYCDCFASGLLCTDDCDCADCHNNSEN 102
                      679**********************************9985 PP
2TCR49.58.4e-16147182439
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      +gC+Ck+++ClkkYCeCf+a++ Cs++CkC +CkN 
  Carubv10013801m 147 RGCKCKRTRCLKKYCECFQANVLCSDNCKCISCKNV 182
                      79*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.9E-1761102IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.41762184IPR005172CRC domain
PfamPF036381.4E-126499IPR005172CRC domain
SMARTSM011141.9E-15144185IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12147181IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTDKVDSGDI ATEKNPKELV LTKLEPSLVV PESPVEELPP NSREPSETKD KRDEEGISTW  60
MKHKGCRCKQ SKCLKLYCDC FASGLLCTDD CDCADCHNNS ENFDARDTAL KRVLARNPNA  120
FNGKSFSSLI DKQCKAEPDT KLGLLSRGCK CKRTRCLKKY CECFQANVLC SDNCKCISCK  180
NVGEASQPSG FALGLNNRKL QEGFDNPEKK IVCENIVNDI GIISPSGHSV GFNSHNTEGG  240
MNYAPAFSGH NSPQVYQRRR HRELPQPDSC PAPLFLLPEN SIQNALGSPM SSSPSPKLPY  300
RKKPPLGYTS TLVPDVGDIC SLLVAAYVSA TATAEDQNRI CINPDDKVDH KSTELLSESE  360
SGNVEEEIQS CGRLIELIDA QYNGEEVYET DLYIEQERAV LATFRDCLQK FIISRLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-186418512124Protein lin-54 homolog
5fd3_B3e-186418512124Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013801m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545880.0AC254588.1 Capsella rubella clone CAP16-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641558.10.0protein tesmin/TSO1-like CXC 8 isoform X2
SwissprotQ700D01e-170TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLR0I2T50.0R0I2T5_9BRAS; Uncharacterized protein
STRINGXP_006297765.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-146Tesmin/TSO1-like CXC domain-containing protein