PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013649m
Common NameCARUB_v10013649mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 463aa    MW: 50619.4 Da    PI: 7.3637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013649mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09274321455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Carubv10013649m 274 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 321
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-10268325No hitNo description
SuperFamilySSF474595.5E-17268339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17270338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6274321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MENELFMNAG VSHAPVMTTS PSSSSAMLNW VSTLPIDPSL SRNLSRDCLF WEKSTEQSVF  60
DSALSSLVSS PTPSTSNFSG GGGENFIIRE LIGKLGNIGD IYGTPASNGN VSGSCYATPM  120
SSPPPRHMMT VAKPPTPLVE FSGDSGFAER AARFSCFGSR SFNGRTNSPF PINNAPVATN  180
EKLPRISSTP ALKPLASQVP AGESSGEISR KRKTKSKQNS PSTASPTKEV EAEKEDSDRK  240
RSKKTEENED KTKSVDPYKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC  300
NKVTGKALML DEIINYVQSL QRQVEFLSMK LSSVNTRLDF NMDAFMSKDI FPSSNNNVMH  360
QQQVVLQLDS SAETLLGDHH ITNLNPRVSS NNNLSETSET RTFISHLPTT LAHFTDSTSQ  420
YSTFSEDDLH SIIHMGFAAQ NRISESNQGP SNQVPSNTKA EL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213SRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013649m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297628.10.0transcription factor bHLH62
SwissprotQ9SRT20.0BH062_ARATH; Transcription factor bHLH62
TrEMBLR0G5870.0R0G587_9BRAS; Uncharacterized protein
STRINGXP_006297628.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]