PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TALE

Protein Properties

Length: 490aa MW: 54658 Da PI: 6.4558

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10013548m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.2	1.4e-08	312	349	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + Carubv10013548m 312 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 349 554458******************************88 PP
2	BELL	125.9	1.5e-40	174	245	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+ Ykqy++q+q+v+ssF+++ag+g+akpYtslAl++iSrhFrcL+dai++qi Carubv10013548m 174 ERQELQSKLSKLLSILDEVDRTYKQYYHQMQIVVSSFDVIAGCGAAKPYTSLALQTISRHFRCLRDAISGQI 245 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.7E-69	116	243	IPR006563	POX domain
Pfam	PF07526	5.4E-45	122	242	IPR006563	POX domain
PROSITE profile	PS50071	11.564	290	353	IPR001356	Homeobox domain
SMART	SM00389	5.9E-9	293	357	IPR001356	Homeobox domain
CDD	cd00086	2.49E-11	293	354	No hit	No description
SuperFamily	SSF46689	5.99E-17	294	360	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-27	296	359	IPR009057	Homeodomain-like
Pfam	PF05920	9.1E-18	310	349	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MATYYKTGSS EIYSRPNVQD FVPGNAMVYT NSYSETFPRE STNINVSASK EIQVLSSFGG 60 ASQQMLEVQD SGSWRDQEDN DRSCFPVMMR LGLSSQIETS RSNNNNEYAN ATHVVSGFTR 120 TIHNSKYLKA AQELLDEAVN VKKALKQFQP EGDKIGEEKE KFLQTNVAEI PQAERQELQS 180 KLSKLLSILD EVDRTYKQYY HQMQIVVSSF DVIAGCGAAK PYTSLALQTI SRHFRCLRDA 240 ISGQILVIRK SLGGEHDGSD GRGVGISRLR NVDQQVRQQR TLQRLGVMQP HTWRPQRGLP 300 DSSVLVLRAW LFEHFLHPYP KDSDKIMLAR QTGLSRGQVS NWFINARVRL WKPMVEEMYK 360 EEFTDSLEEN DPNLSSENTP EITEIQEQQT ESSSNNGNVS GLASSSMGQS TVARGGAQFM 420 MVSDMTGNGS GGMSLTLGIQ NSDARGDVPM SGGIVHYENT ISGTDFQYLN SHNHQHRLGS 480 SKLLHDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MATYYKTGSS EIYSRPNVQD FVPGNAMVYT NSYSETFPRE STNINVSASK EIQVLSSFGG  60
ASQQMLEVQD SGSWRDQEDN DRSCFPVMMR LGLSSQIETS RSNNNNEYAN ATHVVSGFTR  120
TIHNSKYLKA AQELLDEAVN VKKALKQFQP EGDKIGEEKE KFLQTNVAEI PQAERQELQS  180
KLSKLLSILD EVDRTYKQYY HQMQIVVSSF DVIAGCGAAK PYTSLALQTI SRHFRCLRDA  240
ISGQILVIRK SLGGEHDGSD GRGVGISRLR NVDQQVRQQR TLQRLGVMQP HTWRPQRGLP  300
DSSVLVLRAW LFEHFLHPYP KDSDKIMLAR QTGLSRGQVS NWFINARVRL WKPMVEEMYK  360
EEFTDSLEEN DPNLSSENTP EITEIQEQQT ESSSNNGNVS GLASSSMGQS TVARGGAQFM  420
MVSDMTGNGS GGMSLTLGIQ NSDARGDVPM SGGIVHYENT ISGTDFQYLN SHNHQHRLGS  480
SKLLHDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	8e-15	299	357	5	63	Homeobox protein Meis2
3k2a_B	8e-15	299	357	5	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10013548m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY056796	0.0	AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBank	BT000609	0.0	BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297524.1	0.0	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	0.0	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	R0G4L1	0.0	R0G4L1_9BRAS; Uncharacterized protein
STRING	XP_006297524.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2869	25	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	0.0	BEL1-like homeodomain 7

Link Out ? help Back to Top
Phytozome	Carubv10013548m
Entrez Gene	17891411

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]