PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10013109m | ||||||||
Common Name | CARUB_v10013105mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 692aa MW: 76826.5 Da PI: 8.9558 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.3 | 8.3e-06 | 231 | 250 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ f++ G+C+ G+ C+F+H Carubv10013109m 231 PCK-FLAAGFCRNGNYCRFSH 250 799.6666************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.061 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 692 aa Download sequence Send to blast |
MSGLGRTHVS NWDSKEDSHH HHSSLTASSG AYYRDKESEP VRFNSESNGS RRSGAETNQH 60 PGEARSRSIV SQSNDNSYDS ERDDTRQQIF PRNGSRSNSM SRSRSRSPVY RGKHKTRTLV 120 SPTPIREFNK RGSGHHFDQS NDHGLEDDTR KPRKTKYHTD DFRGEAMMTG ARFSVYNTKF 180 PEDNSRREHL HDNGFSDPRL RRHRSEFTGV KDTQRRNGDG EGQFHRTSNI PCKFLAAGFC 240 RNGNYCRFSH HGAGRKQPQD KHFYRQDSNN HNKWNDVERL DNGRLGGIEV SRASKGVSEP 300 NRNSSSWIDD MEMSPDWNYG VQSLKNPVKE EHSVGIIGQS SQSQVLKGGL VSHNEQSSGM 360 FSHGGKTMVE KPIAASHQSY SHPVNVTPVQ AFSQNHNVLP YQSSLTAGGS QQVLATAAAD 420 LSVGSNLSNV ESGKVYQNNH QSTVERPVLV QNTVSKEQLD KITSISATIA QFLANGEPIP 480 ELVKALQMPL HSESSMDIQP NQATTTVHSQ SNVMSSNPNQ LCGLGMNIGA GGVPVVTASQ 540 VNNVSGIQDL TLNPKGCEEN RNKKTHESSK EEEGKKTGED TNDAENIVDE DEDDVGSDKE 600 NKKGIDPKEM RAFKFALVEV VKELLNPTWK EGKMDKDGYK NIVKKVVEKV TVTMQSGSVP 660 QTQENIDHYL SASKPKLTKL VQAYISKIKK T* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10013109m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641197.1 | 0.0 | zinc finger CCCH domain-containing protein 38 | ||||
Swissprot | Q9LIH5 | 0.0 | C3H38_ARATH; Zinc finger CCCH domain-containing protein 38 | ||||
TrEMBL | R0G3V2 | 0.0 | R0G3V2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297102.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 8e-12 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10013109m |
Entrez Gene | 17892573 |