PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 785aa MW: 90107.4 Da PI: 7.1586

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10013017m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	7.8e-20	63	137	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn++A+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel Carubv10013017m 63 DYYNSFATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 137 69************************************876..............589*************************98 PP
2	FAR1	68.4	1.8e-21	224	300	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCskeg+++++ r+gC a +++k++++g w v++l+++HnHel p Carubv10013017m 224 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 300 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-15	63	137	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.3E-17	224	300	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-25	396	488	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	670	706	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-8	677	703	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-8	681	708	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MDMESADTEP TSLNCGNNNM VVKAYPLGMV RIMNNNGIGE DEGDSVVEPY VGLEFDTAEE 60 ARDYYNSFAT RTGFKVRTGQ LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC PAFIRVQRRD 120 TGKWVLDQIQ KEHNHELGGH VEETTPRPSV QQRAPAPTKL GISVPHRPKM KVVDEADKGR 180 SCPSGVISFK RFKGAEESDE QTQPKATTEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG 240 QLFRSKVDGS ITSRRFVCSK EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHELEP 300 GKKNAGMKKI TEDVTGGLDS VDLIELNDFN NHISTTRENT IGKEWYPVLF DYFQSKQAED 360 MGFFYAVELD SNGSCMSIFW ADSRSRFACS QFGDAVVFDT SYRNGEYSVP FATFIGFNHH 420 RQPVLLGGAL VADESKEAFS WLFQTWLRAM SGRRPRSIIA DQDLPIQQAV AQVFPGAHHR 480 FSAWQIRSKE QENLRSFPNE FKYEYEKCLY QSQTTVEFDT MWSALVNKYG LRDNMWLREI 540 YEKRENWVPA YLRASFFGGI PVNGTFEPFY GTSLNSLISL REFISRYEQG LEQRREEERK 600 EDFNSYNLQP FLQTKEPVEE QCRRLYTLTI FRIFQSELAQ SYNYLGLKTY EEGAISRFLV 660 RKCGNENEKH AVTFSASNLN ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT 720 KNAEFGFVRD VESGVTSQDL KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL 780 CWQR*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MDMESADTEP TSLNCGNNNM VVKAYPLGMV RIMNNNGIGE DEGDSVVEPY VGLEFDTAEE  60
ARDYYNSFAT RTGFKVRTGQ LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC PAFIRVQRRD  120
TGKWVLDQIQ KEHNHELGGH VEETTPRPSV QQRAPAPTKL GISVPHRPKM KVVDEADKGR  180
SCPSGVISFK RFKGAEESDE QTQPKATTEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG  240
QLFRSKVDGS ITSRRFVCSK EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHELEP  300
GKKNAGMKKI TEDVTGGLDS VDLIELNDFN NHISTTRENT IGKEWYPVLF DYFQSKQAED  360
MGFFYAVELD SNGSCMSIFW ADSRSRFACS QFGDAVVFDT SYRNGEYSVP FATFIGFNHH  420
RQPVLLGGAL VADESKEAFS WLFQTWLRAM SGRRPRSIIA DQDLPIQQAV AQVFPGAHHR  480
FSAWQIRSKE QENLRSFPNE FKYEYEKCLY QSQTTVEFDT MWSALVNKYG LRDNMWLREI  540
YEKRENWVPA YLRASFFGGI PVNGTFEPFY GTSLNSLISL REFISRYEQG LEQRREEERK  600
EDFNSYNLQP FLQTKEPVEE QCRRLYTLTI FRIFQSELAQ SYNYLGLKTY EEGAISRFLV  660
RKCGNENEKH AVTFSASNLN ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT  720
KNAEFGFVRD VESGVTSQDL KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL  780
CWQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10013017m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC018907	0.0	AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297026.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_023641342.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_023641343.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	R0HJN8	0.0	R0HJN8_9BRAS; Uncharacterized protein
STRING	XP_006297026.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Carubv10013017m
Entrez Gene	17892973

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]