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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012991m | ||||||||
Common Name | CARUB_v10012991mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 818aa MW: 92965 Da PI: 5.5549 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 454 | 498 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+ Ed+ l + +++ G +W Ia +g++Rt+ qc r+q Carubv10012991m 454 GPWTEAEDKNLPRIIEEKGLTDWVEIAVSLGTNRTPFQCLARYQR 498 89*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 6.1e-14 | 506 | 550 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+ WT+eEd++l av+++G ++W ++a+ + gR + qc +rw k Carubv10012991m 506 RKEWTPEEDDQLRAAVELFGDKDWQSVANVLK-GRAGTQCSNRWKK 550 789****************************9.***********98 PP | |||||||
3 | Myb_DNA-binding | 53.3 | 6.5e-17 | 557 | 602 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw + Carubv10012991m 557 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 602 79******************************.***********986 PP | |||||||
4 | Myb_DNA-binding | 46.5 | 8.8e-15 | 609 | 653 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEde+l++a+ ++G W+++a+++ Rt++qc rw ++ Carubv10012991m 609 RGKWTEEEDEKLKEAIGKHGYS-WSKVASHLA-CRTDNQCLRRWKTL 653 89******************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.879 | 354 | 447 | IPR017877 | Myb-like domain |
SMART | SM00717 | 24 | 358 | 449 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 361 | 377 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 423 | 459 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.77E-11 | 446 | 503 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.291 | 448 | 500 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.6E-10 | 452 | 502 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-8 | 454 | 498 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-6 | 455 | 500 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-12 | 460 | 512 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.52E-20 | 485 | 555 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.559 | 501 | 556 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 505 | 554 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-13 | 506 | 550 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.03E-11 | 508 | 552 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-16 | 513 | 554 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-14 | 556 | 605 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 557 | 602 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.459 | 557 | 603 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-20 | 558 | 607 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.10E-11 | 559 | 601 | No hit | No description |
SuperFamily | SSF46689 | 1.11E-25 | 583 | 658 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.078 | 604 | 658 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-20 | 608 | 654 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 608 | 656 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 609 | 653 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.64E-11 | 611 | 653 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MNRNSLYEAY GDDDDDDEDD IGEELEELRQ ACMVAGANSN EFSAKTNSIE ADGGGGGEMP 60 SDSEDEDDLM LRTISSQLAP SKDADLSGGP PIGLSLPSDS DSEDDFEMIR NITSQLALPM 120 DVPLPRIGLS DDDDEDEDFE TIRVIRRRFS AYDSEANFGN DSLGKKKQVH DLDNEPSREI 180 LSRSNTCESF PDHGKSVVTV PDSEDVRDGH SVDVHDITST EPLDHLDTSQ LSLMPAASST 240 FPEAAQAFVD AIRKNRAYQK FLRRKLEVIE ATIEQNEKHR KNVKIVKDFQ ASCKRRTKLA 300 LSQRKDPRVE LISARKCVPC DSSEGNDKKT SPLMLGPPEN PFVAKYRMAL EKYPVSVERR 360 NWSTEENKNL AKGLKQEVQK ILLYEAIEQS RDLEDSTYDI DTINESIRNL EITPEMIRQF 420 LPKINWDSLD IKDRSAAECE ARWMSSEDPL INHGPWTEAE DKNLPRIIEE KGLTDWVEIA 480 VSLGTNRTPF QCLARYQRSL NPSILRKEWT PEEDDQLRAA VELFGDKDWQ SVANVLKGRA 540 GTQCSNRWKK SLRPTRKGRW SLEEDKRVKV AVTLFGSQNW HKISQFVPGR TATQCRERWV 600 NCLEPKVNRG KWTEEEDEKL KEAIGKHGYS WSKVASHLAC RTDNQCLRRW KTLYPHQVVL 660 LQQARRLRKE AIVGNFVDRE SERPALVTGA ILALPEISLE PDPDSVALKN KRKAKQRKSD 720 AERQPKRRRK GLEKCSGDVI RQENATVCEK EPNNGGEEKS LELERYNEIQ DNAKEKQRRS 780 RKRVAETPNN TTGLRKLTPR RKKVSAVVPI KNQDALN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-29 | 415 | 650 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-29 | 415 | 650 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 710 | 728 | KRKAKQRKSDAERQPKRRR |
2 | 780 | 802 | RKRVAETPNNTTGLRKLTPRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012991m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY033827 | 0.0 | AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296998.1 | 0.0 | snRNA-activating protein complex subunit 4 | ||||
TrEMBL | R0G3G9 | 0.0 | R0G3G9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296998.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6504 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012991m |
Entrez Gene | 17893350 |