PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012963m
Common NameCARUB_v10012963mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 859aa    MW: 97623.5 Da    PI: 7.9198
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012963mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1159.47e-50311463118
             CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                      + k rwl+++ei+aiL n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+++tf r
  Carubv10012963m  31 EAKGRWLRPNEIHAILSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDKTTFVR 124
                      4489****************************************************************************************** PP

             CG-1  97 rcywlLeeelekivlvhylevk 118
                      rcywlL++++e+ivlvhy++++
  Carubv10012963m 125 RCYWLLDKARENIVLVHYRDTQ 146
                      *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.36925151IPR005559CG-1 DNA-binding domain
SMARTSM010762.0E-7728146IPR005559CG-1 DNA-binding domain
PfamPF038593.2E-4431144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-4319403IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.92E-16319405IPR014756Immunoglobulin E-set
PfamPF018336.9E-7320404IPR002909IPT domain
CDDcd002041.14E-15507615No hitNo description
PfamPF127963.2E-7507585IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-16514618IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-16515622IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.91523588IPR020683Ankyrin repeat-containing domain
SMARTSM002484.5E-6556585IPR002110Ankyrin repeat
PROSITE profilePS5008811.808556588IPR002110Ankyrin repeat
PROSITE profilePS500967.144705729IPR000048IQ motif, EF-hand binding site
PfamPF006120.21705721IPR000048IQ motif, EF-hand binding site
SMARTSM0001559720742IPR000048IQ motif, EF-hand binding site
SMARTSM000150.022743765IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.091744768IPR000048IQ motif, EF-hand binding site
PfamPF006120.015745765IPR000048IQ motif, EF-hand binding site
SMARTSM0001511817839IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261818847IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MDGDGSGRLI GSEIHGFHTL HDLDVQTTLE EAKGRWLRPN EIHAILSNPK YFTINVKPVN  60
LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDKT  120
TFVRRCYWLL DKARENIVLV HYRDTQEAAT SSGESNSSPI EVSDQTFPNL MTAEHIDFSI  180
ENSRYIASNN SPVVRNHEIS LHDINTLDWD ELLIPTDLHN QSAPTEDDLS YYTEPLQNAA  240
NGSAAPVNVT VGDESLDALL NNGPQSRESF GRWMNSFIGE SNGSLEDSSF QPMVTLEQDP  300
LAPQALFHPH SNIPEQVFNI TDVSPAWAYS SEKTKILVTG FLHDSYQHLE RSNIFCICGD  360
SCVPAEYLQP GVYRCIIPPH SPGMVNLYLS VDGNKPISQC FRFEHRSVSV LDKTIPEDNQ  420
ESKWEEFEFQ VRLSHLLFTS SNKLNVLSSK ISPPNLRDAK KLASKTSHLL NSWAYLIKSI  480
QGNKVSFDQA KDNLFELTLK NRLKEWLVEK VLEGRNTLDY DSKGLGVIHL CAILGYTWSI  540
QLFSLSGLSL NFRDKQGWTA LHWAAYYGRE KMVAALLSAG ARPNLVTDPT KDNLGGCMAA  600
DLAEQNGYDG LAAYLAEKCL VAQFRDMKIA GNISGNLETC KAEMLNQGTL PEDEQSLKDA  660
LAAYRTAAEA AARIQGAFRE KALKAARSSV IQFANKEEEA KSIIAAMKIQ NAFRKYDTRR  720
KIEAAYRIQC RFQTWKMRKE YLNMRRQAIR IQAAFRGLQA RRQYKKIVWS VGVLEKAVLR  780
WRQKRKGFRG LQVAAKEDSP GEAEDFYKTS QRQAEERLER SVVRVQAMFR SKKAQQDYRR  840
MKLTHEEAQL EYDCLEDI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012963m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296968.10.0calmodulin-binding transcription activator 6 isoform X1
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLR0G3E30.0R0G3E3_9BRAS; Uncharacterized protein
STRINGXP_006296968.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]