PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012720m
Common NameCARUB_v10012720mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 265aa    MW: 30515.4 Da    PI: 6.3189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012720mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.13.6e-23110170259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v++ ++ p +  +tY g+H+++
  Carubv10012720m 110 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQKIQHSPPLYSTTYFGQHTCQ 170
                      6**************************988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23102170IPR003657WRKY domain
PROSITE profilePS5081119.979104172IPR003657WRKY domain
SuperFamilySSF1182901.44E-22105171IPR003657WRKY domain
SMARTSM007741.3E-33109171IPR003657WRKY domain
PfamPF031066.2E-23111170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNSYQQKAME KLLQGRGCAN QLLVMDHTES DSSMEREDLA KSVLHCFSDA LSILIDTNEH  60
QDDHSNNSSP QESSPVLESG RKPPHKRGRK TSMAESSDYH RHESPTPIYH DGFLWRKYGQ  120
KQIKESDHQR SYYKCAYTKD QNCEAKKQVQ KIQHSPPLYS TTYFGQHTCQ LHQAYATFPI  180
ETSDPEDHEG SHMIRFGQPN TSFSPSANSL RQHQNQNQNH MEDEYMKPEK AEEWSSSQWM  240
SSEVAHAVEA FEFNPFWTSH DLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141111701069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012720m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937300.0AB493730.1 Arabidopsis thaliana At5g01900 mRNA for hypothetical protein, partial cds, clone: RAAt5g01900.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279334.10.0probable WRKY transcription factor 62
SwissprotQ9LZV61e-171WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLR0ET480.0R0ET48_9BRAS; Uncharacterized protein
STRINGXP_006279334.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-163WRKY DNA-binding protein 62