 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10012720m |
| Common Name | CARUB_v10012720mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
WRKY |
| Protein Properties |
Length: 265aa MW: 30515.4 Da PI: 6.3189 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10012720m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 73.1 | 3.6e-23 | 110 | 170 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
+Dg+ WrKYGqK++k+s++ rsYY+C+++ +C++kk+v++ ++ p + +tY g+H+++
Carubv10012720m 110 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQKIQHSPPLYSTTYFGQHTCQ 170
6**************************988899**************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
| GO:0042742 | Biological Process | defense response to bacterium |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MNSYQQKAME KLLQGRGCAN QLLVMDHTES DSSMEREDLA KSVLHCFSDA LSILIDTNEH 60
QDDHSNNSSP QESSPVLESG RKPPHKRGRK TSMAESSDYH RHESPTPIYH DGFLWRKYGQ 120
KQIKESDHQR SYYKCAYTKD QNCEAKKQVQ KIQHSPPLYS TTYFGQHTCQ LHQAYATFPI 180
ETSDPEDHEG SHMIRFGQPN TSFSPSANSL RQHQNQNQNH MEDEYMKPEK AEEWSSSQWM 240
SSEVAHAVEA FEFNPFWTSH DLSS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493730 | 0.0 | AB493730.1 Arabidopsis thaliana At5g01900 mRNA for hypothetical protein, partial cds, clone: RAAt5g01900. |
