PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10012077m

Common Name

CARUB_v10012077mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 228aa MW: 24852.6 Da PI: 5.6946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10012077m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00021	114	148	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++ L++l+ + +K + a++L +++ YIk Lq Carubv10012077m 114 VSEKITALQQLVSPY-----GKTDTASVLNETTGYIKFLQ 148 678999999999998.....9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.058	98	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.14E-5	102	152	No hit	No description
SuperFamily	SSF47459	1.16E-9	113	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-8	113	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MRGTTEEEDG VTNFSDVLLL SNDVLGSSNV GEDSFGVGFI GNDTTQMLCF GGRNQNNAGL 60 IFSGPSSSNM TRTVNDKSSR SNKRTGSSDE HDRVCDPKPG KRCKRDQKKS SVKVSEKITA 120 LQQLVSPYGK TDTASVLNET TGYIKFLQDQ VQVLSSPYLK HHTLEDEDTK DVNPTMRELK 180 NNGLCLVPLA WTVHVANTNG ADLWSPAILS PTVNQYTVEA KSYQDNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10012077m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306245.1	1e-169	transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	5e-57	BH113_ARATH; Transcription factor bHLH113
TrEMBL	R0IPP1	1e-168	R0IPP1_9BRAS; Uncharacterized protein
STRING	XP_006306245.1	1e-168	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	2e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10012077m
Entrez Gene	17900821

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]