PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012060m
Common NameCARUB_v10012060mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 690aa    MW: 78059 Da    PI: 9.5164
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012060mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-151499195
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     ffk l     ++++ l +p  f+++h +g + ++kt +l++  s ++W vk+  ++ +    lt+GW+eF+ a++L+ gD+vvF+++g++ f  +v
  Carubv10012060m 14 FFKPL--LPGFRTH-LNIPVAFFSKHvEGRNDQNKTARLRSdASDETWLVKM--DGLK----LTDGWEEFAFAHDLRIGDIVVFRHEGEMVF--HV 98
                     67777..6677777.99**********77778999*****97889*******..6666....***********************9998888..66 PP

                     E CS
               B3 95 k 95
                     +
  Carubv10012060m 99 T 99
                     5 PP
2B363.14.4e-20155246699
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l+++rl +p +fa+ +g++k ++k++ l +e+grsW++ l ++k + ++++++GW++F+ ang+ +g   +F+l++ +++ +v++++r+
  Carubv10012060m 155 VTAWGLSNDRLNIPLTFARLNGLNKMRGKKIYLHNEEGRSWKLGLVHDKAGMHTYFKSGWRSFCAANGISQGRY-TFQLVR-KSAPPVIRLCRS 246
                      6777899*****************************************************************96.***998.8999******97 PP
3B349.67.2e-163984681788
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      +lp +f +++g+ k+++  ++l d +grsW+++l+y+  + +++++ GW +F++ang+ +g  ++Fkl++ +
  Carubv10012060m 398 YLPLTFERSNGLHKKSGERIVLLDGEGRSWNLNLKYNEAGMHTYIRPGWTRFCDANGMSQGQQFTFKLVQ-K 468
                      79*****************************************************************987.4 PP
4B3696.4e-22498587697
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++++l+++rl+l+++f+++ g++k    +++le+e+g+ W++ l++ k+ ++++l++GW  F+++ngLk gD++ Fkl+g +++++v+++f
  Carubv10012060m 498 VTASSLTTDRLCLSRSFVRSSGLDKGY-EEIVLENEWGKGWNLVLKHYKSCCSTILGGGWTTFCQDNGLKPGDSFKFKLVG-TGERPVLSLF 587
                      67899999*************999865.6**************************************************99.6666777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-218106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-199111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.63211104IPR003340B3 DNA binding domain
CDDcd100172.78E-151299No hitNo description
SMARTSM010195.1E-2114104IPR003340B3 DNA binding domain
PfamPF023621.9E-92196IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-16143246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-15146247IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.365150247IPR003340B3 DNA binding domain
SMARTSM010192.2E-22151247IPR003340B3 DNA binding domain
PfamPF023627.0E-18155246IPR003340B3 DNA binding domain
CDDcd100176.18E-13160245No hitNo description
SuperFamilySSF1019368.63E-10255319IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0025260321IPR003340B3 DNA binding domain
PROSITE profilePS508637.81284320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-5285319IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.8E-12385480IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-12397469IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-13397469IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-14398473IPR003340B3 DNA binding domain
CDDcd100171.47E-11398468No hitNo description
PROSITE profilePS5086312.633399480IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-19486584IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-20489587IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.029493592IPR003340B3 DNA binding domain
SMARTSM010195.9E-24494590IPR003340B3 DNA binding domain
CDDcd100178.77E-19498587No hitNo description
PfamPF023629.8E-21498587IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MADQSLRSPT KPHFFKPLLP GFRTHLNIPV AFFSKHVEGR NDQNKTARLR SDASDETWLV  60
KMDGLKLTDG WEEFAFAHDL RIGDIVVFRH EGEMVFHVTA LGPSCCEIKY TSPSSHNMIN  120
DDQTNIVSRN SSRVKKNTRK KVESSSNHSR FVANVTAWGL SNDRLNIPLT FARLNGLNKM  180
RGKKIYLHNE EGRSWKLGLV HDKAGMHTYF KSGWRSFCAA NGISQGRYTF QLVRKSAPPV  240
IRLCRSNQRS AAESASDHSC FKRHVSPSSL RYDQLYLPRS FVSSNGWTNF CHVNGIKVGD  300
FFKFKLAGTW EEPVLSLCPA ESNRDKTPLK CSEISNDVNP EESEEETTGD KNISRHYLDL  360
KKRKYRSRCR ASVENMDDDQ TNIVCERLIK LCDGILQYLP LTFERSNGLH KKSGERIVLL  420
DGEGRSWNLN LKYNEAGMHT YIRPGWTRFC DANGMSQGQQ FTFKLVQKAA PPIMRLYLAK  480
RRPISESSSH HSYLVGSVTA SSLTTDRLCL SRSFVRSSGL DKGYEEIVLE NEWGKGWNLV  540
LKHYKSCCST ILGGGWTTFC QDNGLKPGDS FKFKLVGTGE RPVLSLFLAD SNHVSNHEKT  600
PLECPEGSDD VKYLSSSSGD DSSKSNESGN ESIDGRNKNN SQYSGEIKKR KYFWKCRASS  660
PSYTQDRFVT LTLTQSAFQT YKLVSFINN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012060m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633067.10.0B3 domain-containing protein REM17
SwissprotQ84WP30.0REM17_ARATH; B3 domain-containing protein REM17
TrEMBLR0GPB90.0R0GPB9_9BRAS; Uncharacterized protein
STRINGXP_006304728.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]