PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012043m
Common NameCARUB_v10012043mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 114aa    MW: 13189.1 Da    PI: 9.7226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012043mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.3e-06711081355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ i+s++e L+e+ P++   p    +  +iL  A+eY+k+L+
  Carubv10012043m  71 RELIRSKLEALKEVTPNC---PE--SDINAILDCAIEYLKHLH 108
                      7889*************9...44..45559***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.74758107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-762109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-564108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MNNDEEFLRL LNSLDNPEAH RINSEGGEDN VSRKRPAESR RHGKKNRVKR QCVTKSSDKS  60
RDDKLLAKIK RELIRSKLEA LKEVTPNCPE SDINAILDCA IEYLKHLHLA ILFR
Functional Description ? help Back to Top
Source Description
UniProtRequired during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012043m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632872.11e-75transcription factor MEE8
SwissprotQ9FRI03e-37MEE8_ARATH; Transcription factor MEE8
TrEMBLR0ILF65e-76R0ILF6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006304970.18e-77(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1706168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25310.11e-39bHLH family protein