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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Carubv10011955m |
| Common Name | CARUB_v10011955mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
ERF |
| Protein Properties |
Length: 148aa MW: 15988.6 Da PI: 5.9069 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10011955m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53 | 8.8e-17 | 11 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykG+r++k +g+Wv+eIr+p + r r +lg+f tae+Aa a++ a +l++
Carubv10011955m 11 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFFCLHQ 61
89*****998.**********943...5*********************999986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 148 aa
Download sequence Send
to blast |
MDYRESGESQ SKYKGIRRRK WGKWVSEIRV PGTRDRLWLG SFSTAEGAAV AHDVAFFCLH 60
QPDSLESLNF PHLLNPSIAS KTSPRSIQQA ASNAGMAIDA GIVHSNGFVS GNTAYSDTTT 120
SSESGGADEV EPLNISVYDY LDGHDHV*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF325106 | 1e-113 | AF325106.1 Arabidopsis thaliana hypothetical protein (T22J18.2) mRNA, complete cds. |
| GenBank | AY086697 | 1e-113 | AY086697.1 Arabidopsis thaliana clone 26867 mRNA, complete sequence. |
| GenBank | BT024683 | 1e-113 | BT024683.1 Arabidopsis thaliana At1g22810 mRNA, complete cds. |
| GenBank | CP002684 | 1e-113 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | T22J18 | 1e-113 | AC003979.2 Arabidopsis thaliana chromosome 1 BAC T22J18 sequence, complete sequence. |
