PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011902m | ||||||||
Common Name | CARUB_v10011902mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 166aa MW: 19049.9 Da PI: 10.2143 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.9 | 7e-22 | 3 | 122 | 14 | 128 |
NAM 14 lvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlskkge 98 lv++yL++++++ k +ik++++y++ePw Lp+ v++ +ekew++F+kr k+ gk +nr+ g+W ++g+++++l +++ Carubv10011902m 3 LVDQYLRRRIDTGKE---GFIKDIKLYEYEPWLLPH-VNNdlfGEKEWFYFVKRTLKA--GKTPNRKvlgrggSIVGTWTTSGSKEAILGRNKV 90 89**********994...56***************4.333356899*******99886..667888534444433799**************** PP NAM 99 lvglkktLvfykg..rapkgektdWvmheyrl 128 ++g k L +yk + kg +t W+m ey l Carubv10011902m 91 VIGHKAELSYYKDvkGQVKGDSTGWCMTEYWL 122 ***********643378899**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.248 | 1 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.24E-25 | 3 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-11 | 3 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MTLVDQYLRR RIDTGKEGFI KDIKLYEYEP WLLPHVNNDL FGEKEWFYFV KRTLKAGKTP 60 NRKVLGRGGS IVGTWTTSGS KEAILGRNKV VIGHKAELSY YKDVKGQVKG DSTGWCMTEY 120 WLASKNDEFQ ELVLCYIRGK KKQVKNVSSY SGTNRAFAPR GDIIAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011902m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303744.2 | 1e-118 | NAC domain-containing protein 19 | ||||
TrEMBL | R0GL05 | 1e-119 | R0GL05_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006303744.1 | 1e-120 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14544 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 9e-21 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011902m |
Entrez Gene | 17898097 |