PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 368aa MW: 40547.5 Da PI: 8.1019

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10011841m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.6e-12	183	227	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+++++ + ++ G+g+Wk I++ + k Rt+ q+ s+ qky Carubv10011841m 183 PWTENEHKRFLIGLQKVGKGDWKGISKNFVKSRTPTQVASHAQKY 227 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.873	176	232	IPR017930	Myb domain
SuperFamily	SSF46689	1.4E-16	178	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-17	179	230	IPR006447	Myb domain, plants
SMART	SM00717	8.6E-7	180	230	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-10	182	227	IPR009057	Homeodomain-like
CDD	cd00167	2.11E-6	183	228	No hit	No description
Pfam	PF00249	1.6E-9	183	227	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MHVVEVESPY LNLDGIYDHD TTQQGRRRRS KALSQIHSTP PRLLLICTVL IKNRFPKGKS 60 KSDARAISEK VFFSPSFLLM AAVSSSSETG DSGAAGKRDE IMLFGVRVVI DPMRKCVSLN 120 NLSDYEEKSS PDDEIPKTVV PGAGDGDDKN ETVIVADGYA SANDAVHISC SSAGNRERKR 180 GVPWTENEHK RFLIGLQKVG KGDWKGISKN FVKSRTPTQV ASHAQKYFLR RTNLNRRRRR 240 SSLFDITTET VTEMPMEQDQ TQENSPLPET NVSSGHQVMQ VDAEVAVMTK TESSAQTFNL 300 NDSYLVPVTF QANPAFNLNT EAAPLSLNLS LASSFNLNEQ PNSRHSAFTM MPSFSDGDSN 360 SSIIRVA*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MHVVEVESPY LNLDGIYDHD TTQQGRRRRS KALSQIHSTP PRLLLICTVL IKNRFPKGKS  60
KSDARAISEK VFFSPSFLLM AAVSSSSETG DSGAAGKRDE IMLFGVRVVI DPMRKCVSLN  120
NLSDYEEKSS PDDEIPKTVV PGAGDGDDKN ETVIVADGYA SANDAVHISC SSAGNRERKR  180
GVPWTENEHK RFLIGLQKVG KGDWKGISKN FVKSRTPTQV ASHAQKYFLR RTNLNRRRRR  240
SSLFDITTET VTEMPMEQDQ TQENSPLPET NVSSGHQVMQ VDAEVAVMTK TESSAQTFNL  300
NDSYLVPVTF QANPAFNLNT EAAPLSLNLS LASSFNLNEQ PNSRHSAFTM MPSFSDGDSN  360
SSIIRVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10011841m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023644829.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	3e-56	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	R0IPK7	0.0	R0IPK7_9BRAS; Uncharacterized protein
STRING	XP_006306200.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-151	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Carubv10011841m
Entrez Gene	17898552

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]