PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011792m | ||||||||
Common Name | CARUB_v10011792mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29443.4 Da PI: 8.1535 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 70 | 122 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h+ +Er+RR++ + + Lr +lP+ ++K s ++ +e+A +YIk+Lq Carubv10011792m 70 KRAKHKDIERQRRQEATTLYKSLRFILPShY---IKGKRSSSDHVEEAGNYIKDLQ 122 79***************************77...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-12 | 66 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-8 | 67 | 126 | No hit | No description |
PROSITE profile | PS50888 | 12.411 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-9 | 70 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDFADSSSFT LDFANENYLD FSSLITPSTL ISFQEPNPCN PIIQNDGRQK VRETTMASEI 60 RKGDDEPKNK RAKHKDIERQ RRQEATTLYK SLRFILPSHY IKGKRSSSDH VEEAGNYIKD 120 LQKKIKEISE KRDRIKSTVT HRSSSTSRCS LRPLASSTSS TCSCFGDTHM AVVVRPCLIG 180 LEVVVSCCLR HESFLSSVLQ LLTQEQYCLN VVSCISTRQP QSFIHTIVSE VVEGIEVYHS 240 EIHEKIMKMG RSSYEYLY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 81 | KRAKHKDIERQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011792m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303696.1 | 0.0 | transcription factor bHLH55 | ||||
Swissprot | Q9LN95 | 1e-123 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | R0I2Y4 | 0.0 | R0I2Y4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303696.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 1e-120 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011792m |
Entrez Gene | 17900214 |
Publications ? help Back to Top | |||
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