PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011476m
Common NameCARUB_v10011476mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 314aa    MW: 35662 Da    PI: 6.3791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011476mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15118169155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Carubv10011476m 118 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 169
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.85E-13116173No hitNo description
SuperFamilySSF474594.06E-17117181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.196117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14117171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-12118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPLEAIVYPQ DPFGYLSNCK DFMMFHDCLY PQEEEVAQDT KHNIDKSGQE QSFHVLEQQG  60
KEEDRQWRDY HQYPLLIPSL EEELGLPAND VENHPPLQQR RKRRRTRNSK NKEEIENQRM  120
THIAVERNRR KQMNEYLAVL RSLMPSSYAQ RGDQASIVGG AINYVKELEH ILQSMGTKRT  180
TTTSTTHDVE GATTSTSSLV SPFSDFFSFP QFSTKSSEVP AESSSSSADI EVTVAETHAN  240
IKIMAKKKPR QLIKLVASLQ SLKLTLLHLN VTTHHNSILY SISVKVEEGS QLNTVDDIAT  300
ALNQTIMRIQ EES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104QRRKRRR
2100104RKRRR
3100105RKRRRT
4118129RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011476m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304982.10.0transcription factor bHLH94
SwissprotQ9SK911e-172BH094_ARATH; Transcription factor bHLH94
TrEMBLR0IHJ20.0R0IHJ2_9BRAS; Uncharacterized protein
STRINGXP_006304982.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-136bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]