PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10011385m

Common Name

CARUB_v10011385mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 267aa MW: 29434.8 Da PI: 4.5041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10011385m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00035	214	250	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a +L +Av+Y+ksL Carubv10011385m 214 RKKMKKMMGVLRRIVPGG-----EQMNTACVLDEAVQYLKSL 250 899***********95.....68*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.09	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-6	212	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-7	214	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MQNNQFPHFS DEVGDRNMHN PYASGSSFDA LFPPCAKLPY HGVELQPTAV CPKNFVIFDQ 60 TYDRSQVMYH PELTHKLMNT PSLNALASTF QNEYVGSTYQ NEYVGSTYQN EYAGGSYGNY 120 DQEVSTSHQE DPNEIDALLS ADEDYGEDDN EGDEDGGDSE EVSTGRNSYR DYGNSSSAES 180 CCSSYGYNNN NNNNSRKQSL SGSASSTNDG KKGRKKMKKM MGVLRRIVPG GEQMNTACVL 240 DEAVQYLKSL KIEAQKLGVG HFSNQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	218	KKGRKKMKK
2	212	220	GRKKMKKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10011385m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC008030	1e-148	AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBank	AC022455	1e-148	AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBank	AF361607	1e-148	AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	AK230374	1e-148	AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBank	AK318702	1e-148	AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBank	AY074843	1e-148	AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	CP002684	1e-148	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303619.1	0.0	transcription factor bHLH144
Swissprot	Q9ASX9	1e-133	BH144_ARATH; Transcription factor bHLH144
TrEMBL	R0GKS4	0.0	R0GKS4_9BRAS; Uncharacterized protein
STRING	XP_006303619.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-121	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10011385m
Entrez Gene	17898182

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]