PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011368m
Common NameCARUB_v10011368mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 99aa    MW: 11175.8 Da    PI: 9.3365
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011368mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.4e-061136227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++lC++++ tG C+   +CkF+H++
  Carubv10011368m 11 DEPLCSYYQITGNCNMKQNCKFHHPK 36
                     789*********************96 PP
2zf-CCCH28.82.2e-095881326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                      ++C++++r+G Ck G+rCk+ H+
  Carubv10011368m 58 KAICPHYSRFGLCKSGPRCKYDHS 81
                     689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0044936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46937IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-61036IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-51435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-75281IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-45582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5585583IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-75881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-46082IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSDKNLPQRP DEPLCSYYQI TGNCNMKQNC KFHHPKNIKP IEPKLVLTDN GLPLRPNKAI  60
CPHYSRFGLC KSGPRCKYDH STRPSSSVNA QLTSKEDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011368m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644725.14e-59zinc finger CCCH domain-containing protein 13
SwissprotQ3ECU82e-38C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLR0GT251e-66R0GT25_9BRAS; Uncharacterized protein
STRINGXP_006306053.12e-67(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.17e-41C3H family protein