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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011345m | ||||||||
Common Name | CARUB_v10012009mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 134aa MW: 16021.7 Da PI: 9.7911 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.1 | 2.3e-13 | 10 | 49 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+ien++ r tf++R+ i+KKA ELS d+ev+v+++ Carubv10011345m 10 KFIENERSRLSTFCRRQCSIFKKADELSKIPDVEVCVLLL 49 79***********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-6 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.998 | 2 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-13 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.62E-12 | 4 | 47 | No hit | No description |
PRINTS | PR00404 | 1.0E-5 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-12 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-5 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MAPRQKREIK FIENERSRLS TFCRRQCSIF KKADELSKIP DVEVCVLLLL RKRNQEELEK 60 SKMLEKVELE DLVAFKEKLE ALRADRKRRH EEMKASATLL MLSEETENKK MKIEADPREK 120 YELRPRIPRN YVE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 111 | RKRRHEEMKASATLLMLSEETENKKMK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011345m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306046.2 | 4e-82 | uncharacterized protein LOC17898799 | ||||
TrEMBL | R0GPW6 | 1e-77 | R0GPW6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304928.1 | 2e-78 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16164 | 5 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47760.1 | 4e-24 | AGAMOUS-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011345m |
Entrez Gene | 17898683 |